EPIDEMIOLOGICAL AND MOLECULAR-GENETIC PECULIARITIES OF COVID-19 INFECTION DURING FIFTH WAVE OF PANDEMIC IN CONSTITUENT ENTITIES OF THE FAR EASTERN FEDERAL DISTRICT OF THE RUSSIAN FEDERATION
Abstract
Fifth wave of COVID-19 pandemic was registered in the Far Eastern Federal district (FEFD) of the Russian Federation during winter and spring periods of year 2022. Highest incidence (931.3 0/0000) was registered during sixth calendar week of the year (from 7th to 13th February). Territorial divergence of COVID-19 incidence with highest rate in the Republic Sakha (Yakutia) was detected. Unstable situation was registered in Sakhalin, Amur and Jewish Autonomous oblasts. Decline in weekly mortality rate (from 1.8 to 1.34%) due to new coronavirus infection was revealed in the FEFD. Inverse correlation between mortality and Omicron genovariant percentage was discovered. It was revealed that Omicron has replaced Delta variant by week 10 (from 7th to 13th March) of the 2022 calendar year. Should be noted that during the period of observation proportions of Omicron genetic lines changed: BA.1 was characterized by weekly growth and subsequent decline, as for BA.2 – weekly growth of circulation activity among population was revealed. Significant positive correlation between percentage of BA.1 and BA.2 lines and percentage of vaccinated people among people infected with COVID-19 was detected. Common features of incidence growth and decrease of mortality in different constituent entities of the FEFD during fifth wave of COVID-19 were caused by importation of COVID-19 cases and following spread of new Omicron genetic variant. The new genovariant is more contagious compared to Delta variant and can cause breakthrough infections after vaccination or previous infection more often. Omicron infection generally causes less severe disease than infection with prior variants.
About the Authors
O. E. TrotsenkoRussian Federation
Khabarovsk
T. V. Korita
Russian Federation
Khabarovsk
V. O. Kotova
Russian Federation
Khabarovsk
E. Yu. Sapega
Russian Federation
Khabarovsk
O. P. Kurganova
Russian Federation
Blagoveshchensk
T. A. Zaitseva
Russian Federation
Khabarovsk
M. E. Ignatyeva
Russian Federation
Yakutsk
T. N. Detkovskaya
Russian Federation
Vladivostok
P. V. Kopylov
Russian Federation
Birobidzhan
O. A. Funtusova
Russian Federation
Yuzhno-Sakhalinsk
E. N. Burdinskaya
Russian Federation
Blagoveshchensk
Yu. A. Natykan
Russian Federation
Blagoveshchensk
E. A. Bazykina
Russian Federation
Khabarovsk
L. V. Butakova
Russian Federation
Khabarovsk
L. V. Balakhontseva
Russian Federation
Khabarovsk
T. N. Karavyanskaya
Russian Federation
Khabarovsk
References
1. Антонец Д.В., Старчевская М.Е., Колосова Н.П., Суслопаров И.М., Даниленко А.В., Боднев С.А., Швалов А.Н., Трегубчак Т.В., Рыжиков А.Б., Пьянков О.В., Максютов Р.А. 2022. Предварительный анализ генетической изменчивости изолятов вируса SARS-CoV-2, относящихся к варианту Омикрон, циркулирующих на территории Российской Федерации. COVID-19-PREPRINTS.MICROBE.RU. https://doi.org/10.21055/preprints-3112049.
2. Молекулярно-генетический мониторинг штаммов возбудителя новой коронавирусной инфекции: Методические рекомендации МР 3.1.0272-22 / Роспотребнадзор, 2022.
3. Савилов Е.Д. Статистические методы анализа. – М.: Наука-Центр, 2011. – 156 с.
4. Эпидемиологический анализ: учебное пособие / А.В. Слободенюк, А.А. Косова, Р.Н. Ан. – Екатеринбург: Изд. ГБОУ ВПО УГМУ Минздрава России, 2015. – 36 с.
5. Dzinamarira T. et al. Unpacking the Implications of SARS-CoV-2 Breakthrough Infections on COVID-19 Vaccination Programs //Vaccines. – 2022. – vol. 10. – №. 2. – С. 252.
6. Gaspersic J., Dolzan V. Viral and Host Genetic and Epigenetic Biomarkers Related to SARS-CoV-2 Cell Entry, Infection Rate, and Disease Severity //Biology. – 2022. – vol. 11. – №. 2. – p. 178.
7. Guo T., Fan Y., Chen M. et al. Cardiovascular implications of fatal outcomes of patients with Coronavirus Disease 2019 (COVID-19). JAMA Cardiol. 2020; e201017. Doi: 10.1001/Jamacardio.2020.1017.
8. Kuster G.M., Pfister O., Burkardet T. et al. SARS-CoV-2: should inhibitors of the renin-angiotensin system be withdrawn in patients with COVID-19. Eur Heart J. 2020; 41 (19): 1801-1803. Doi: 10.1093/eurheart/ehaa235.
9. Peacock T.P., Sheppaed C.M., Brown J.C., Goonawardane N., Zhou J., Whiteley M. et al. The SARSCoV-2 variants associated with infections in India, B.1.617, show enhanced spike cleavage by furin. bioRxiv (2021). DOI: 10.1101/2021.05.28.446163.
10. SeyedAlinaghi S, Mirzapour P, Dadras O. et al. Characterization of SARS-CoV-2 different variants and related morbidity and mortality: a systematic review. Eur J Med Res. 2021; 26(1):51. Published 2021 Jun 8. doi:10.1186/s40001-021-00524-8.
11. Suzuki R., Yamasoda D., Kimura I., Wang L., Kishimoto M., Ito J. et al. Attenuated fusogenicity and pathogenicity of SARS-CoV-2 Omicron variant. Nature (2022). DOI: 10.1038/s41586-022-04462-1.
12. Tracking SARS-CoV-2 variants. https://www.who.int/en/activities/tracking-SARS-CoV-2-variants (дата обращения: 26.01.22).
13. Ulrich L., Halwe N.J., Taddeo A., Ebert N., Schon J., Devisme C. et al. Enhanced fitness of SARSCoV-2 variant of concern Alpha but not Beta. Nature (2021). 602 (7896): 307-3013. DOI: 10.1038/s41586-021-04342-0.
14. Willet B.J., Grove J., MacLean O.A., Wilkie C., Logan N., De Lorenzo G. et al. The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism. medRxiv (2022). DOI: 10.1101/2022.01/03.21268111.
15. Yi S, Kim JM, Choe YJ, et al. SARS-CoV-2 Delta Variant Breakthrough Infection and Onward Secondary Transmission in Household. J Korean Med Sci. 2022; 37(1):e12. Published 2022 Jan 3. doi:10.3346/jkms.2022.37.e12.
16. Zhou F., Yu T., Du R. et al. Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study. Lancet. 2020; 395(10229): 1054-1062. Doi: 10.1016/S0140-6736(20)30566-3.
Review
For citations:
Trotsenko O.E., Korita T.V., Kotova V.O., Sapega E.Yu., Kurganova O.P., Zaitseva T.A., Ignatyeva M.E., Detkovskaya T.N., Kopylov P.V., Funtusova O.A., Burdinskaya E.N., Natykan Yu.A., Bazykina E.A., Butakova L.V., Balakhontseva L.V., Karavyanskaya T.N. EPIDEMIOLOGICAL AND MOLECULAR-GENETIC PECULIARITIES OF COVID-19 INFECTION DURING FIFTH WAVE OF PANDEMIC IN CONSTITUENT ENTITIES OF THE FAR EASTERN FEDERAL DISTRICT OF THE RUSSIAN FEDERATION. Far Eastern Journal of Infectious Pathology. 2022;(42):54-69. (In Russ.)