Preview

Far Eastern Journal of Infectious Pathology

Advanced search

EPIDEMIOLOGICAL AND MOLECULAR-GENETIC PECULIARITIES OF COVID-19 INFECTION DURING FIFTH WAVE OF PANDEMIC IN CONSTITUENT ENTITIES OF THE FAR EASTERN FEDERAL DISTRICT OF THE RUSSIAN FEDERATION

Abstract

Fifth wave of COVID-19 pandemic was registered in the Far Eastern Federal district (FEFD) of the Russian Federation during winter and spring periods of year 2022. Highest incidence (931.3 0/0000) was registered during sixth calendar week of the year (from 7th to 13th February). Territorial divergence of COVID-19 incidence with highest rate in the Republic Sakha (Yakutia) was detected. Unstable situation was registered in Sakhalin, Amur and Jewish Autonomous oblasts. Decline in weekly mortality rate (from 1.8 to 1.34%) due to new coronavirus infection was revealed in the FEFD. Inverse correlation between mortality and Omicron genovariant percentage was discovered. It was revealed that Omicron has replaced Delta variant by week 10 (from 7th to 13th March) of the 2022 calendar year. Should be noted that during the period of observation proportions of Omicron genetic lines changed: BA.1 was characterized by weekly growth and subsequent decline, as for BA.2 – weekly growth of circulation activity among population was revealed. Significant positive correlation between percentage of BA.1 and BA.2 lines and percentage of vaccinated people among people infected with COVID-19 was detected. Common features of incidence growth and decrease of mortality in different constituent entities of the FEFD during fifth wave of COVID-19 were caused by importation of COVID-19 cases and following spread of new Omicron genetic variant. The new genovariant is more contagious compared to Delta variant and can cause breakthrough infections after vaccination or previous infection more often. Omicron infection generally causes less severe disease than infection with prior variants.

About the Authors

O. E. Trotsenko
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



T. V. Korita
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



V. O. Kotova
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



E. Yu. Sapega
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



O. P. Kurganova
Regional Rospotrebnadzor office in the Amur oblast
Russian Federation

Blagoveshchensk



T. A. Zaitseva
Regional Rospotrebnadzor office in the Khabarovsk krai
Russian Federation

Khabarovsk



M. E. Ignatyeva
Regional Rospotrebnadzor office in the Republic Sakha
Russian Federation

Yakutsk



T. N. Detkovskaya
Regional Rospotrebnadzor office in the Primorsky region
Russian Federation

Vladivostok



P. V. Kopylov
Regional Rospotrebnadzor office in the Jewish Autonomous region
Russian Federation

Birobidzhan



O. A. Funtusova
Regional Rospotrebnadzor office in the Sakhalin oblast
Russian Federation

Yuzhno-Sakhalinsk



E. N. Burdinskaya
FBUZ “Center of hygiene and epidemiology in the Amur oblast”
Russian Federation

Blagoveshchensk



Yu. A. Natykan
FBUZ “Center of hygiene and epidemiology in the Amur oblast”
Russian Federation

Blagoveshchensk



E. A. Bazykina
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



L. V. Butakova
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



L. V. Balakhontseva
FBIS Khabarovsk scientific research institute of epidemiology and microbiology of Rospotrebnadzor (Federal service for surveillance on consumers rights protection and human wellbeing)
Russian Federation

Khabarovsk



T. N. Karavyanskaya
Regional Rospotrebnadzor office in the Khabarovsk krai
Russian Federation

Khabarovsk



References

1. Антонец Д.В., Старчевская М.Е., Колосова Н.П., Суслопаров И.М., Даниленко А.В., Боднев С.А., Швалов А.Н., Трегубчак Т.В., Рыжиков А.Б., Пьянков О.В., Максютов Р.А. 2022. Предварительный анализ генетической изменчивости изолятов вируса SARS-CoV-2, относящихся к варианту Омикрон, циркулирующих на территории Российской Федерации. COVID-19-PREPRINTS.MICROBE.RU. https://doi.org/10.21055/preprints-3112049.

2. Молекулярно-генетический мониторинг штаммов возбудителя новой коронавирусной инфекции: Методические рекомендации МР 3.1.0272-22 / Роспотребнадзор, 2022.

3. Савилов Е.Д. Статистические методы анализа. – М.: Наука-Центр, 2011. – 156 с.

4. Эпидемиологический анализ: учебное пособие / А.В. Слободенюк, А.А. Косова, Р.Н. Ан. – Екатеринбург: Изд. ГБОУ ВПО УГМУ Минздрава России, 2015. – 36 с.

5. Dzinamarira T. et al. Unpacking the Implications of SARS-CoV-2 Breakthrough Infections on COVID-19 Vaccination Programs //Vaccines. – 2022. – vol. 10. – №. 2. – С. 252.

6. Gaspersic J., Dolzan V. Viral and Host Genetic and Epigenetic Biomarkers Related to SARS-CoV-2 Cell Entry, Infection Rate, and Disease Severity //Biology. – 2022. – vol. 11. – №. 2. – p. 178.

7. Guo T., Fan Y., Chen M. et al. Cardiovascular implications of fatal outcomes of patients with Coronavirus Disease 2019 (COVID-19). JAMA Cardiol. 2020; e201017. Doi: 10.1001/Jamacardio.2020.1017.

8. Kuster G.M., Pfister O., Burkardet T. et al. SARS-CoV-2: should inhibitors of the renin-angiotensin system be withdrawn in patients with COVID-19. Eur Heart J. 2020; 41 (19): 1801-1803. Doi: 10.1093/eurheart/ehaa235.

9. Peacock T.P., Sheppaed C.M., Brown J.C., Goonawardane N., Zhou J., Whiteley M. et al. The SARSCoV-2 variants associated with infections in India, B.1.617, show enhanced spike cleavage by furin. bioRxiv (2021). DOI: 10.1101/2021.05.28.446163.

10. SeyedAlinaghi S, Mirzapour P, Dadras O. et al. Characterization of SARS-CoV-2 different variants and related morbidity and mortality: a systematic review. Eur J Med Res. 2021; 26(1):51. Published 2021 Jun 8. doi:10.1186/s40001-021-00524-8.

11. Suzuki R., Yamasoda D., Kimura I., Wang L., Kishimoto M., Ito J. et al. Attenuated fusogenicity and pathogenicity of SARS-CoV-2 Omicron variant. Nature (2022). DOI: 10.1038/s41586-022-04462-1.

12. Tracking SARS-CoV-2 variants. https://www.who.int/en/activities/tracking-SARS-CoV-2-variants (дата обращения: 26.01.22).

13. Ulrich L., Halwe N.J., Taddeo A., Ebert N., Schon J., Devisme C. et al. Enhanced fitness of SARSCoV-2 variant of concern Alpha but not Beta. Nature (2021). 602 (7896): 307-3013. DOI: 10.1038/s41586-021-04342-0.

14. Willet B.J., Grove J., MacLean O.A., Wilkie C., Logan N., De Lorenzo G. et al. The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism. medRxiv (2022). DOI: 10.1101/2022.01/03.21268111.

15. Yi S, Kim JM, Choe YJ, et al. SARS-CoV-2 Delta Variant Breakthrough Infection and Onward Secondary Transmission in Household. J Korean Med Sci. 2022; 37(1):e12. Published 2022 Jan 3. doi:10.3346/jkms.2022.37.e12.

16. Zhou F., Yu T., Du R. et al. Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study. Lancet. 2020; 395(10229): 1054-1062. Doi: 10.1016/S0140-6736(20)30566-3.


Review

For citations:


Trotsenko O.E., Korita T.V., Kotova V.O., Sapega E.Yu., Kurganova O.P., Zaitseva T.A., Ignatyeva M.E., Detkovskaya T.N., Kopylov P.V., Funtusova O.A., Burdinskaya E.N., Natykan Yu.A., Bazykina E.A., Butakova L.V., Balakhontseva L.V., Karavyanskaya T.N. EPIDEMIOLOGICAL AND MOLECULAR-GENETIC PECULIARITIES OF COVID-19 INFECTION DURING FIFTH WAVE OF PANDEMIC IN CONSTITUENT ENTITIES OF THE FAR EASTERN FEDERAL DISTRICT OF THE RUSSIAN FEDERATION. Far Eastern Journal of Infectious Pathology. 2022;(42):54-69. (In Russ.)

Views: 18


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 2073-2899 (Print)