ROTAVIRUS INFECTION IN THE KHABAROVSK KRAI
Abstract
Epidemiological analysis of rotavirus infection incidence was carried out and results of molecular genetic monitoring of rotaviruses circulating in the Khabarovsk krai during year 2022 were analyzed. It was established that rotavirus infection incidence rate in the year 2022 was slightly higher than longterm average level calculated for the period of observation that included years 2010–2019 (92.3 and 90.5 per 100 000 population, respectively). Predominance of preschool children was revealed among infected patients. Four outbreaks of rotavirus infection were registered in children's educational institutions in the year 2022. Molecular genetic analysis of pathogens found in foci of the outbreaks revealed circulation of three prevalent G-genotype rotaviruses: G9, G4 and G3. Phylogenetic analysis of rotavirus A genotype G9 indicated their possible importation from the countries of Southeast Asia when analysis of rotavirus A genotype G3 strains allowed to classify them as reassortants. Other rotavirus strains obtained from the foci of the disease outbreaks located the Khabarovsk krai were typed as P[8]-3 lineage in accordance with P-genotype strains. Regular monitoring of rotaviruses carried out against the background of continuous epidemiological analysis of incidence makes it possible describe the epidemic process of rotavirus infection in a specific territory more accurately.
About the Authors
E. Yu. SapegaRussian Federation
Khabarovsk
L. V. Butakova
Russian Federation
Khabarovsk
O. E. Trotsenko
Russian Federation
Khabarovsk
T. A. Zaitseva
Russian Federation
Khabarovsk
T. N. Karavyanskaya
Russian Federation
Khabarovsk
Yu. A. Garbuz
Russian Federation
Khabarovsk
L. A. Lebedeva
Russian Federation
Khabarovsk
References
1. Государственный доклад «О состоянии санитарно-эпидемиологического благополучия населения в Российской Федерации в 2022 году» https://www.rospotrebnadzor.ru/documents/details.php?ELEMENT_ID=25076.
2. Сашина Т.А., Морозова О.В., Епифанова Н.В., Кашников А.Ю., Леонов А.В., Новикова Н.А. Молекулярный мониторинг ротавирусов (Reoviridae: Sedoreovirinae: Rotavirus: Rotavirus A), циркулирующих в Нижнем Новгороде (2012–2020 гг.): обнаружение штаммов с новыми генетическими характеристиками // Вопросы вирусологии. – 2021. – № 66(2). – C. 140-151.
3. Ющук Н.Д., Найговзина Н.Б. Введение в медицинскую статистику с основами эпидемиологического анализа: учебное пособие. – М.: ГЭОТАР-Медиа, 2021. – 192 с.
4. Barsoum Z. Paediatric viral gastroenteritis and regional predominant viral pathogens in the postrotavirus vaccination year: prospective Irish regional study // Sudanese journal of paediatrics. - 2021. - Vol. 21, N1. - P. 36-41.
5. Bawa F.K., Mutocheluh M., Dassah S.D., Ansah P., Oduro A.R. Genetic diversity of rotavirus infection among young children with diarrhoea in the Kassena-Nankana Districts of Northern Ghana: a seasonal cross-sectional survey // Pan African Medical Journal. - 2023. - Vol. 28, N44. - P.148.
6. Chan-It W., Chanta C. Emergence of G9P[8] rotaviruses in children with acute gastroenteritis in Thailand, 2015-2016 // Journal of Medical Virology. - 2018. - Vol. 90, N3. - P. 477-484.
7. Chia G., Ho H.J., Ng C.G. et al. An unusual outbreak of rotavirus G8P[8] gastroenteritis in adults in an urban community, Singapore, 2016 // Journal of Clinical Virology. - 2018. - Vol. 105. - P. 57-63.
8. Dian Z., Wang B., Fan M. et al. Completely genomic and evolutionary characteristics of humandominant G9P[8] group A rotavirus strains in Yunnan, China // Journal of General Virology. - 2017. - Vol. 98, N6. - P. 1163-1168.
9. Dian Z., Fan M., Wang B. et al. The prevalence and genotype distribution of rotavirus A infection among children with acute gastroenteritis in Kunming, China // Archives of Virology. - 2017. - Vol. 162. - P. 281–285.
10. Graves N.S. Acute gastroenteritis // Prim Care. - 2013. - Vol. 40, N3. - P. 727-741.
11. Green K.Y., Sarasini A., Qian Y. et al. Genetic variation in rotavirus serotype 4 subtypes // Virology. - 1992. - Vol. 188, N1. - P.362-368.
12. Jampanil N., Kumthip K., Maneekarn N., Khamrin P. Genetic Diversity of Rotaviruses Circulating in Pediatric Patients and Domestic Animals in Thailand // Tropical Medicine and Infectious Disease. - 2023. - Vol. 29, N8 (7). - P. 347.
13. Koukou D.M., Michos A., Chatzichristou P. et al. Greek Rotavirus Study Group. Rotavirus epidemiology and genotype distribution in hospitalised children, Greece, 2008 to 2020: A prospective multicentre study // Eurosurveillance. - 2022. - Vol. 27, N47. - P. 2101133.
14. Mandal P., Mullick S., Nayak M.K. et al. Complete genotyping of unusual species A rotavirus G12P[11] and G10P[14] isolates and evidence of frequent in vivo reassortment among the rotaviruses detected in children with diarrhea in Kolkata, India, during 2014 // Archives of Virology. - 2016. - Vol. 161, N10. - P. 2773-2785.
15. Matthijnssens J., Ciarlet M., McDonald S.M. et al. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG) // Archives of Virology. - 2011. - Vol. 156, N8. - P. 1397-1413.
16. Nelsen A., Lager K.M., Stasko J., Nelson E., Lin C.M., Hause B.M. Identification of Pulmonary Infections With Porcine Rotavirus A in Pigs With Respiratory Disease // Frontiers in Veterinary Science. - 2022. - Vol. 23, N9. - P. 918736.
17. Niendorf S., Ebner W., Marques A.M. et al. Rotavirus outbreak among adults in a university hospital in Germany // Journal of Clinical Virology. - 2020. - Vol. 129. - P. 104532.
18. Ranshing S., Ganorkar N., Ramji S., Gopalkrishna V. Complete genomic analysis of uncommon G12P[11] rotavirus causing a nosocomial outbreak of acute diarrhea in the newborns in New Delhi, India // Journal of Medical Virology. - 2022. - Vol. 94, N6. - P. 2613-2623.
19. Suzuki H. Rotavirus Replication: Gaps of Knowledge on Virus Entry and Morphogenesis // Tohoku Journal of Experimental Medicine. - 2019. - Vol. 248, N4. - P. 285-296.
20. Tian Y., Chughtai A.A., Gao Z. et al. Prevalence and genotypes of group A rotavirus among outpatient children under five years old with diarrhea in Beijing, China, 2011-2016 // BMC Infectious Diseases. - 2018. - Vol. 18, N1. - P.497.
21. UNICEF Data: Monitoring the situation of children and women. Accessed July 03, 2023 https://data.unicef.org/topic/child-health/diarrhoeal-disease.
22. Wang S.J., Chen L.N., Wang S.M. et al. Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment // BMC Infectious Diseases. - 2022. - Vol. 22, N1. - P. 579.
23. World Health Organization. Manual of rotavirus detection and characterization methods. Accessed July 10, 2023 https://apps.who.int/iris/bitstream/handle/10665/70122/WHO_IVB_08.17_eng.pdf?sequence=1.
24. World Health Organization. Media centre: Diarrhoeal disease. Accessed July 03, 2023 https://www.who.int/news-room/fact-sheets/detail/diarrhoeal-disease.
25. Yuzhakov A., Yuzhakova K., Kulikova N. et al. Prevalence and genetic diversity of group a rotavirus genotypes in Moscow (2019–2020) // Pathogens. - 2021. - Vol. 10, N6. - P. 674.
26. Zhou N., Lv D., Wang S. et al. Continuous detection and genetic diversity of human rotavirus A in sewage in eastern China, 2013-2014 // Virology Journal. - 2016. - Vol.13, N1. - P. 153.
Review
For citations:
Sapega E.Yu., Butakova L.V., Trotsenko O.E., Zaitseva T.A., Karavyanskaya T.N., Garbuz Yu.A., Lebedeva L.A. ROTAVIRUS INFECTION IN THE KHABAROVSK KRAI. Far Eastern Journal of Infectious Pathology. 2023;(45):24-31. (In Russ.)