Methods of genotyping and phylogenetic analysis of epidemiological investigations of enterovirus infection on the territory of the Far Eastern Federal District of the Russian Federation, that were exposed to flood in 2013
Abstract
Flood emergency on the territory of Khabarovsk region, Amur Region and Jewish Autonomous Region necessitated wider application of molecular-genetic methods of typing and evaluation of origin of enteroviruses. The most commonly detected enteroviruses in 2013, such as Coxsackie B-5, A-6, A-9, A-16 and ECHO-6 were subjected to phylogenetic analysis. The level of genetic similarity and possibility of epidemiological relationship were analyzed for Enterovirus 71. Performed studies indicate different origin of enteroviruses including importation of viruses, most likely from countries of Asia-Pacific Region.
About the Authors
E. Yu. Sapega
Khabarovsk research institute of epidemiology and microbiology of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
O. E. Trotsenko
Khabarovsk research institute of epidemiology and microbiology of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
O. P. Kurganova
Administration of Federal service on customer's rights protection and human well-being surveillance of Amur Oblast
Russian Federation
Russian Federation
V. A. Ott
Administration of Federal service on customer's rights protection and human well-being surveillance of Khabarovsk Region
Russian Federation
Russian Federation
N. V. Korshunova
Amur State Medical Academy
Russian Federation
Russian Federation
T. V. Korita
Khabarovsk research institute of epidemiology and microbiology of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
V. O. Kotova
Khabarovsk research institute of epidemiology and microbiology of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
V. A. Yanovich
Administration of Federal service on customer's rights protection and human well-being surveillance of Jewish Autonomous Region
Russian Federation
Russian Federation
Yu. A. Garbuz
Khabarovsk Region Hygiene and Epidemiology Center
Russian Federation
Russian Federation
P. V. Kopilov
Jewish Autonomous Region Hygiene and Epidemiology Center
Russian Federation
Russian Federation
L. V. Butakova
Khabarovsk research institute of epidemiology and microbiology of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
T. A. Zaitseva
Administration of Federal service on customer's rights protection and human well-being surveillance of Khabarovsk Region
Russian Federation
Russian Federation
A. A. Perepelitsa
Управление Роспотребнадзора по Амурской области
Russian Federation
Russian Federation
T. N. Karavyanskaya
Administration of Federal service on customer's rights protection and human well-being surveillance of Khabarovsk Region
Russian Federation
Russian Federation
E. N. Prisyazhnyuk
Khabarovsk Region Hygiene and Epidemiology Center
Russian Federation
Russian Federation
E. M. Golubeva
Administration of Federal service on customer's rights protection and human well-being surveillance of Khabarovsk Region
Russian Federation
Russian Federation
V. I. Reznik
Khabarovsk Region Hygiene and Epidemiology Center
Russian Federation
Russian Federation
E. S. Mironenko
Управление Роспотребнадзора по Еврейской автономной области
Russian Federation
Russian Federation
L. A. Balahontseva
ФБУН Хабаровский НИИ эпидемиологии и микробиологии Роспотребнадзора
Russian Federation
Russian Federation
A. P. Bondarenko
ФБУН Хабаровский НИИ эпидемиологии и микробиологии Роспотребнадзора
Russian Federation
Russian Federation
A. N. Lukashev
Chumakov Institute of Poliomyelitis and Viral Encephalitides of RAMS
Russian Federation
Russian Federation
S. V. Balakhonov1O
Irkuts antiplague research institute of Siberia and Far East of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
A. K. Noskov1O
Irkuts antiplague research institute of Siberia and Far East of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
S. A. Kosilko1O
Irkuts antiplague research institute of Siberia and Far East of Federal service on customer's rights protection and human well-being surveillance
Russian Federation
Russian Federation
N. A. Novikova
Blokhina Research Institute of Epidemiology and Microbiology, Nizhny Novgorod
Russian Federation
Russian Federation
L. N. Golitsina
Blokhina Research Institute of Epidemiology and Microbiology, Nizhny Novgorod
Russian Federation
Russian Federation
M. E. Ignat’Eva
Administration of Federal service on customer's rights protection and human well-being surveillance of Republic of Sakha (Yakutia)
Russian Federation
Russian Federation
A. A. Rubtsova
Administration of Federal service on customer's rights protection and human well-being surveillance of Magadan Oblast
Russian Federation
Russian Federation
B. B. Darizhapov
Administration of Federal service on customer's rights protection and human well-being surveillance of Sakhalin Oblast
Russian Federation
Russian Federation
G. G. Onishchenko
Russian Academy of Sciences
Russian Federation
Russian Federation
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Review
For citations:
Sapega E.Yu., Trotsenko O.E., Kurganova O.P., Ott V.A., Korshunova N.V., Korita T.V., Kotova V.O., Yanovich V.A., Garbuz Yu.A., Kopilov P.V., Butakova L.V., Zaitseva T.A., Perepelitsa A.A., Karavyanskaya T.N., Prisyazhnyuk E.N., Golubeva E.M., Reznik V.I., Mironenko E.S., Balahontseva L.A., Bondarenko A.P., Lukashev A.N., Balakhonov1O S.V., Noskov1O A.K., Kosilko1O S.A., Novikova N.A., Golitsina L.N., Ignat’Eva M.E., Rubtsova A.A., Darizhapov B.B., Onishchenko G.G. Methods of genotyping and phylogenetic analysis of epidemiological investigations of enterovirus infection on the territory of the Far Eastern Federal District of the Russian Federation, that were exposed to flood in 2013. Far Eastern Journal of Infectious Pathology. 2014;(25):119-127. (In Russ.)
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